I would like to look at my whole genome vcf for variants that are likely expressed in brain. I see that the IGV server has Body Map brain coverage and bam tracks available. Can I use bedtools somehow to use the Body Map transcriptome data to select only the genome variants that are expressed in brain? It seems to me to be a masking function rather than intersect function. Any suggestions on easy ways to accomplish this?
-Will in Maryland
-Will in Maryland
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