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  • How to download kgml files programmatically

    I need to download kgml file of given EC numbers,don't know how to proceed .
    based on kegg http://www.kegg.jp/kegg/xml/

    The KGML file may be obtained from the "Download KGML" link for each pathway map or by the get method of KEGG API.

  • #2
    Write a script using wget

    Example
    wget "http://www.kegg.jp/kegg-bin/download?entry=ko04010&format=kgml" -O ko04010.xml

    Please beware of KEGG licensing issues.

    Comment


    • #3
      Thanks for reply. but in your example you have used ko , I have EC, is there any way to find Ko given EC.

      Comment

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