Hi
My name is shikha and currently I am working on RNA seq data analysis. I want to compare two different tissue samples eg: one from kidney tissue and another from liver (not replicates of same sample) in terms of differential exon usage and for this purpose I thought DEXSeq tool is the right option but when I am using the command for creating ExonCountSet objects its showing an error:
Error in strsplit(rownames(dcounts), ":") : non-character argument
I don't know how to proceed with two different samples if possible using this tool.
Any suggestions in this regard are highly appreciable.
Thanks,
Best regards,
Shikha Vashisht.
My name is shikha and currently I am working on RNA seq data analysis. I want to compare two different tissue samples eg: one from kidney tissue and another from liver (not replicates of same sample) in terms of differential exon usage and for this purpose I thought DEXSeq tool is the right option but when I am using the command for creating ExonCountSet objects its showing an error:
Error in strsplit(rownames(dcounts), ":") : non-character argument
I don't know how to proceed with two different samples if possible using this tool.
Any suggestions in this regard are highly appreciable.
Thanks,
Best regards,
Shikha Vashisht.
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