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  • m.nyine
    Junior Member
    • Feb 2011
    • 4

    #1

    Installing biopython

    Dear all,

    I have trouble getting biopython installed on my mac.

    When I tried installing it via the terminal I got the following error:

    "unable to execute llvm-gcc-4.2: No such file or directory
    error: command 'llvm-gcc-4.2' failed with exit status 1"

    I have python on my mac

    "Python 2.7.1 (r271:86832, Jun 16 2011, 16:59:05)
    [GCC 4.2.1 (Based on Apple Inc. build 5658) (LLVM build 2335.15.00)] on darwin
    Type "help", "copyright", "credits" or "license" for more information"

    In my understanding there is a C-compiler (GCC 4.2.1)

    How come the error says command 'llvm-gcc-4.4' failed?

    Thank you

    Moses
  • rhinoceros
    Senior Member
    • Apr 2013
    • 372

    #2
    What happens when you type 'gcc' to terminal (without the ' ')?
    savetherhino.org

    Comment

    • maubp
      Peter (Biopython etc)
      • Jul 2009
      • 1544

      #3
      Have you installed Xcode from the App Store yet (free, just a large download)?

      Have you installed the command line tools from within XCode yet? (again, free)

      Once you've done that the Apple flavour compliers should all be available to Biopython and other command line tools you may in future wish to install.
      Last edited by maubp; 08-08-2014, 02:25 AM. Reason: typo

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