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  • adrian
    Member
    • Oct 2009
    • 90
    #1

    IGV - accessing BAM file from different server

    Hi:

    Is it possible to load a bam file located in a cluster server into IGV. I do not want to download bam file to Mac from server and load in IGV.

    thanks
    Adrian
    Tags: None
  • GenoMax
    Senior Member
    • Feb 2008
    • 7142
    #2
    Why not run IGV from the cluster and project the display back to your Mac using XQuartz (X11)?

    Comment

    • dpryan
      Devon Ryan
      • Jul 2011
      • 3478
      #3
      Well, you can load from a URL, but I can't vouch for how fast that really is. Can you just mount a shared file system from the cluster? On our cluster, for example, the $HOME directory is on a shared server that I can mount on my Mac at home (via a VPN connection) or my desktop computer in the lab. That makes things relatively convenient.

      Comment

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