mira assembly

mgbioinfo

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Join Date: Jul 2013

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mira assembly

07-19-2013, 12:14 PM

Anyone worked with barcode reads from ion torrent?

In sff_extract I must to use the --min_left_clip or -c paramether?

The MIRA assembly resulted in large contigs, however many of those have parts that align in different regions in other genome of the same species (using NCBI blast).
I do not know if this is a assembly mistake, or may be due the barcode. I think that it is not normal, because it hapen in many contigs.

Someone can help?
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