Anyone worked with barcode reads from ion torrent?
In sff_extract I must to use the --min_left_clip or -c paramether?
The MIRA assembly resulted in large contigs, however many of those have parts that align in different regions in other genome of the same species (using NCBI blast).
I do not know if this is a assembly mistake, or may be due the barcode. I think that it is not normal, because it hapen in many contigs.
Someone can help?
In sff_extract I must to use the --min_left_clip or -c paramether?
The MIRA assembly resulted in large contigs, however many of those have parts that align in different regions in other genome of the same species (using NCBI blast).
I do not know if this is a assembly mistake, or may be due the barcode. I think that it is not normal, because it hapen in many contigs.
Someone can help?
