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ptong7

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Join Date: Oct 2008

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SNP mapping quality problem

12-23-2009, 01:22 PM

Hi everyone,

I use glfProgs package calling SNP.
And at the output file, the 5th column is Phred-like consensus quality.
Is anyone can tell me how to calculate the consenses mapping quality ( like the MAQ's mapping quality ) by Phred-like consensus quality ?

thanks a million.
Tags: snp mapping quality

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