Hi everyone,
I use glfProgs package calling SNP.
And at the output file, the 5th column is Phred-like consensus quality.
Is anyone can tell me how to calculate the consenses mapping quality ( like the MAQ's mapping quality ) by Phred-like consensus quality ?
thanks a million.
I use glfProgs package calling SNP.
And at the output file, the 5th column is Phred-like consensus quality.
Is anyone can tell me how to calculate the consenses mapping quality ( like the MAQ's mapping quality ) by Phred-like consensus quality ?
thanks a million.