Hi All,
I am running breakdancer output in pindel and getting errors. My command is as follows:
pindel -f human_g1k_v37.fasta -i Sample.config.txt -o Sample.chr11 -c 11 -b Sample.ctx
I am getting the following errors which produces empty pindel SV files:
.............................................................................
Looking at chromosome 11 bases 0 to 5000000.
[bam_index_load] wrong magic number.
*** glibc detected *** pindel: double free or corruption (!prev): 0x000000001ef65800 ***
..............................................................................
This is followed by something like "Backtrace" and "Memory map"
I am using 0.2.4x of May 8, 2013
Can anyone please tell me what seems to be the problem? I looked around and it looks like no one has ever faced the problem. I have also tried different setting but couldn't manage to solve the problem.
Your help is always appreciated.
Many thanks in advance.
Regards
I am running breakdancer output in pindel and getting errors. My command is as follows:
pindel -f human_g1k_v37.fasta -i Sample.config.txt -o Sample.chr11 -c 11 -b Sample.ctx
I am getting the following errors which produces empty pindel SV files:
.............................................................................
Looking at chromosome 11 bases 0 to 5000000.
[bam_index_load] wrong magic number.
*** glibc detected *** pindel: double free or corruption (!prev): 0x000000001ef65800 ***
..............................................................................
This is followed by something like "Backtrace" and "Memory map"
I am using 0.2.4x of May 8, 2013
Can anyone please tell me what seems to be the problem? I looked around and it looks like no one has ever faced the problem. I have also tried different setting but couldn't manage to solve the problem.
Your help is always appreciated.
Many thanks in advance.
Regards
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