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  • riocean
    Junior Member
    • Sep 2009
    • 2

    #1

    TopHat's coverage.wig

    Hi, everyone, i'm just a newer to TopHat, and regarding the coverage.wig file, what does the 3th column --- "dataValues"--- really means?
    reads count?
  • Xi Wang
    Senior Member
    • Oct 2009
    • 317

    #2
    it is the number of reads that cover that site. if the nearby sites have the same value, then they are merged.
    For downstream analysis, we can use another program called cufflink for RPKM.
    Xi Wang

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    • riocean
      Junior Member
      • Sep 2009
      • 2

      #3
      thanks very much!

      Comment

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