reading raw micro RNA sequences
I would like to know about a program (for window users) that could help me to get rid of adapters sequences included on a microRNA output raw reading, and free a significant ATGC sequence reading.
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Trimmomatic is written in Java, so it should run on Windows without any trouble. I have no clue what you mean by "significant ATGC reading". -
You also want to try fastq-mcf (http://code.google.com/p/ea-utils/wiki/FastqMcf).
There is a Windows version available (http://ea-utils.googlecode.com/files...-621-win64.zip).
I'm not sure how if or how microRNA fastqs are any different than any other RNA-seq fastqs but this may be helpful.Comment
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