PAGIT input files

[sivasubramani]

Dear All,

I was trying to use PAGIT - Post Assembly Genome Improvement Toolkit, for one of my assembly. I could not find any proper manual to explaing the steps. when I opened the dotestrun.sh script I could see there are some mandatory input files needed to run the suit. FastQ files, reference fasta file and query fasta file are someof those. Along with these we need to provide reference embl(*.embl) file. I did not understand what that file and from where I can get that file.

Thanks,

Siva

[ThomasDOtto]

Dear Siva,

we simplified the webpage to find the nature protocol that describes the PAGIT tool kit.

http://www.sanger.ac.uk/resources/software/pagit/

Thanks for your interest,
Thomas