I noticed Mutect reports somatic mutations with tumor fraction (ie the percentage of tumor cells that has said mutation). I think this makes sense because it reflects tumor heterogeneity.
But when I tried ExomeCNV for somatic CNV. It doesn't report tumor fraction. (or maybe it does but how to do that?) Do you know any somatic CNV program that reports tumor fraction?
Thanks
But when I tried ExomeCNV for somatic CNV. It doesn't report tumor fraction. (or maybe it does but how to do that?) Do you know any somatic CNV program that reports tumor fraction?
Thanks
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