Indel calling from population data (pool-seq)

jgibbons1

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Join Date: Oct 2009

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#1

Indel calling from population data (pool-seq)

08-01-2013, 05:52 AM

Hi all,
I was wondering if anyone has any particular advice regarding indel calling from a paired-end illumina dataset consisting a pool of gDNA from 20 individuals from a population.

I've been playing around with VarScan but would like to try a few other methods. Does anyone have any experience with Dindel or any other software?

Thank
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KaiYe

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Join Date: Jun 2009

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#2

08-02-2013, 07:35 AM

pindel does take a set of samples for population calling.
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Indel calling from population data (pool-seq)

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