New reference for IGV?

[tsucheta]

Hi broadIT,

I would very much like to use IGV from Broad, but only shortcoming I have is our reference genome is not listed there. Looks like I have to ask them to integrate the GTF files of our reference for us to use. Please let me know if this is not the case. I was playing around with IGV and this is what I understood while playing around with various options.

Thanks

Sucheta

[ECO]

Hi broadIT,

I would very much like to use IGV from Broad, but only shortcoming I have is our reference genome is not listed there. Looks like I have to ask them to integrate the GTF files of our reference for us to use. Please let me know if this is not the case. I was playing around with IGV and this is what I understood while playing around with various options.

Thanks

Sucheta

This does not belong here. Moving to new thread.