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how to use samtools to view the .snp file format generated from MAQ?
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Samtools is used to view alignments in the SAM/BAM format. Have you taken a look at the tools that come with MAQ?Originally posted by johnsequence View Post -
Thanks for reply, but I did not know which tools in MAQ should be used to view the output (final snp file) generated from MAQ because this is first time I handled this type of data. Could you please describe its specificity? Thanks.Comment
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I googled and found the MAQ manual. The .snp format is described there.Originally posted by johnsequence View PostComment
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