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  • Collidor
    Member
    • Jul 2013
    • 12
    #1

    Bam index (.bai) from Partek GS?

    I need to have an accompanying bam index file (.bai format) in order to import my data to Integrative Genome Viewer tool (IGV). Partek GS automatically indexes my bam files to sample.bam.index files, but this is not recognized by IGV.
    How do I go about generating a .bai preferrably through Partek? Samtools does not seem to want to cooperate with me.
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