Hi,
I am a newbie to cufflink. I have a gtf file produced by cufflink. My aim is to find the junctions predicted by cufflink. Can you tell me if it is possible to identify the predicted junctions and how to do so? else should I rely on tophats junctions.bed file?
I am a newbie to cufflink. I have a gtf file produced by cufflink. My aim is to find the junctions predicted by cufflink. Can you tell me if it is possible to identify the predicted junctions and how to do so? else should I rely on tophats junctions.bed file?