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  • pinkypeggy
    Junior Member
    • Aug 2013
    • 1

    #1

    [GEM library] get a mappability wig track with fixed span

    I am work with some selected region from hg18.
    Now I want to generate the mappability score for 100mer in my selected regions.
    I've done gem-indexer and gem mappablity. Now I want to convert the mappability to a wig file with fix span=100 foe every selected region.
    But after gem-2-wig, I have a wig file like this
    variableStep chrom=hg18_chr1_2965603_2985603_+ span=19901
    1 1
    variableStep chrom=hg18_chr1_2965603_2985603_+ span=99
    19902 0
    variableStep chrom=hg18_chr1_27511222_27531222_+ span=940
    1 1
    variableStep chrom=hg18_chr1_27511222_27531222_+ span=2
    941 0.5

    How can I fix the span=100 ?
    Any suggestions are appreciated!

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