Hi,
I have been using MAQ for aligning illumina reads to our reference genome for a while. I have noticed that each short read is shown to align with the genome only once even though it has multiple matching locations. I looked for the manual but did not find any command that will do otherwise i.e; show all the mapping locations for a particular short read.
Thanks
Sucheta
I have been using MAQ for aligning illumina reads to our reference genome for a while. I have noticed that each short read is shown to align with the genome only once even though it has multiple matching locations. I looked for the manual but did not find any command that will do otherwise i.e; show all the mapping locations for a particular short read.
Thanks
Sucheta
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