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  • himanshu04
    Member
    • Mar 2012
    • 35
    #1

    Using DbSnp annotation for mm9 model in Annovar?

    Dear Community,
    I have RNA seq data from mice models. I used Varscan to call somatic mutations. I am able to annotate them using the gene based annotation. I wish to try for the filter based annotation that is dbsnp or 1000genomes or Gerp++ for mm9 but I am unable to get the database for buildver mm9. Can anyone suggest me a good way to do that.
    I really appreciate your help.
    Thanks in advance.
    Tags: None
    • arcolombo698
      Senior Member
      • Nov 2013
      • 142
      #2
      for GERP++ you should just hit -download -webfrom annular -buildver mm9 … check the manual download link… these are available.

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