Using DbSnp annotation for mm9 model in Annovar?

himanshu04

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Using DbSnp annotation for mm9 model in Annovar?

08-16-2013, 07:43 AM

Dear Community,
I have RNA seq data from mice models. I used Varscan to call somatic mutations. I am able to annotate them using the gene based annotation. I wish to try for the filter based annotation that is dbsnp or 1000genomes or Gerp++ for mm9 but I am unable to get the database for buildver mm9. Can anyone suggest me a good way to do that.
I really appreciate your help.
Thanks in advance.
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arcolombo698

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Join Date: Nov 2013

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07-09-2014, 11:29 AM

for GERP++ you should just hit -download -webfrom annular -buildver mm9 … check the manual download link… these are available.
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Using DbSnp annotation for mm9 model in Annovar?

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