hi everyone,
taking my first crack at index building using bowtie.
I'm trying to build my index using a whole genome assembly in a single fasta file.
i first ran with all defaults, and bowtie produced only 4 files.
Both of the .rev files were not generated.
For now we are not doing paired end reads, so I should probably use the -r (which I haven't done yet). But any thoughts on why I am missing those files?
Chris
taking my first crack at index building using bowtie.
I'm trying to build my index using a whole genome assembly in a single fasta file.
i first ran with all defaults, and bowtie produced only 4 files.
Both of the .rev files were not generated.
For now we are not doing paired end reads, so I should probably use the -r (which I haven't done yet). But any thoughts on why I am missing those files?
Chris
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