Orthomcl problems

[jflowers002]

I am trying to run Orthomcl, but when I try the first step to load the blast results into mysql (orthomclLoadBlast), I get the following error:

DBD::mysql::st execute failed: Table 'orthomcl.similarsequences' doesn't exist.

I am not sure what to do.

Thanks!

[GenoMax]

Did you follow the directions in the user guide to install/configure program/database etc?

The error above seems to indicate that you either did not create that table or called it something else.

[jflowers002]

Solved

Thanks for the reply. I forgot to re-run the InstallSchema script after having to uninstall and then re-install Mysql to deal with issues with that installation.

Thanks again!

[impessa]

Hi
Somebody can said me how to process the output file of OrthoMCL to draw the venn diagrams ?

Thanks !!