gene fusion question

[statsteam]

Dear all,

I am new to the gene fusion field and I would like to ask a basic question.

What is a good and easy program to use to detect gene fusion form RNA-Seq data?

Thank you in advance,
-Statsteam

[matrix731]

Maybe you can try SOAPfuse:

Jia W, Qiu K, He M, et al. SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data[J]. Genome biology, 2013, 14(2): R12.

and download from here http://soap.genomics.org.cn/soapfuse.html

[statsteam]

Thanks a lot! By the way, it seems that SOAPfuse requires paired-end reads while the reads I have is single-end. Any other tools for this purpose?