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  • gene fusion question

    Dear all,

    I am new to the gene fusion field and I would like to ask a basic question.

    What is a good and easy program to use to detect gene fusion form RNA-Seq data?

    Thank you in advance,
    -Statsteam

  • #2
    Maybe you can try SOAPfuse:
    Jia W, Qiu K, He M, et al. SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data[J]. Genome biology, 2013, 14(2): R12.
    and download from here http://soap.genomics.org.cn/soapfuse.html

    Comment


    • #3
      Thanks a lot! By the way, it seems that SOAPfuse requires paired-end reads while the reads I have is single-end. Any other tools for this purpose?

      Comment

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