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Have a look here: http://flxlexblog.wordpress.com/2013...athon2-debate/. More are appearing in the literature all the time... -
Scaffold evaluation measures
Hello,
I want to compare the scaffolding of different assemblies and looking for good measures to evaluate the quality.
- N 50
- NG 50
- Blastx and evaluate how many align
- ...
Was my previous approach, now I am seeking new ones. The biggest obstacle using other methods of evaluation often is the lack of a reference genome in my case.
Any good suggestions ?
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The complexity of cancer is clearly demonstrated in the diverse ecosystem of the tumor microenvironment (TME). The TME is made up of numerous cell types and its development begins with the changes that happen during oncogenesis. “Genomic mutations, copy number changes, epigenetic alterations, and alternative gene expression occur to varying degrees within the affected tumor cells,” explained Andrea O’Hara, Ph.D., Strategic Technical Specialist at Azenta. “As...07-08-2024, 03:19 PM
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