Hello,
I want to compare the scaffolding of different assemblies and looking for good measures to evaluate the quality.
Was my previous approach, now I am seeking new ones. The biggest obstacle using other methods of evaluation often is the lack of a reference genome in my case.
Any good suggestions ?
I want to compare the scaffolding of different assemblies and looking for good measures to evaluate the quality.
- N 50
- NG 50
- Blastx and evaluate how many align
- ...
Was my previous approach, now I am seeking new ones. The biggest obstacle using other methods of evaluation often is the lack of a reference genome in my case.
Any good suggestions ?
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