I have downloaded the bam file from 1000genome and want to infer the phylogenetic tree of a certain gene using paml or phyml. how can I do it step by step? bam2fasta?
bam file such as: NA19732.mapped.ILLUMINA.bwa.MXL.low_coverage.20120522.bam
bam file such as: NA19732.mapped.ILLUMINA.bwa.MXL.low_coverage.20120522.bam