Has anyone used Softgenetics NEXTGENe or CLC genomics workbench? I am trying to find a analysis package that will help with gap analysis. After a run on the Illumina Genome Analyzer it will align the reference sequence to my sample run, but Illumina will not give me a spreadsheet print out of the gaps between the reference and the sample run. Has anyone used the above software for this? Are there other suggestions for this issue?
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Last edited by virushunter; 01-11-2010, 08:08 AM.
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