merge two Trinity transcriptome assemblies into one - SEQanswers

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keithforest

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Join Date: Aug 2010

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#16

09-24-2013, 08:22 AM

@blahah404 The gapfiller/cap3 approach does sound interesting. With that many transcriptomes, what was your method of choice in terms of data normalization/preprocessing and assembly?

@dampor This tool uses protein homology and cap3 to merge contigs, although I've personally never evaluated it https://github.com/vsbuffalo/blast2cap3
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