sorry i mean
fastq-dump -Z $1 | bowtie -v 3 -k 2 --sam $2 -|samtools faidx $2 -| samtools view -u -t -$3
fastq-dump -Z $1 | bowtie -v 3 -k 2 --sam $2 -|samtools faidx $2 -| samtools view -u -t -$3
You are currently viewing the SEQanswers forums as a guest, which limits your access. Click here to register now, and join the discussion
fastq-dump -Z $1 | bowtie -v 3 -k 2 --sam $2 - | samtools view -bS -o $3 -
Topics | Statistics | Last Post | ||
---|---|---|---|---|
Started by seqadmin, 04-11-2024, 12:08 PM
|
0 responses
59 views
0 likes
|
Last Post
by seqadmin
04-11-2024, 12:08 PM
|
||
Started by seqadmin, 04-10-2024, 10:19 PM
|
0 responses
57 views
0 likes
|
Last Post
by seqadmin
04-10-2024, 10:19 PM
|
||
Started by seqadmin, 04-10-2024, 09:21 AM
|
0 responses
53 views
0 likes
|
Last Post
by seqadmin
04-10-2024, 09:21 AM
|
||
Started by seqadmin, 04-04-2024, 09:00 AM
|
0 responses
56 views
0 likes
|
Last Post
by seqadmin
04-04-2024, 09:00 AM
|
Comment