Hi,
I am wondering if anyone has ever come across this GATK error during the VariantRecalibrator step
I am wondering if anyone has ever come across this GATK error during the VariantRecalibrator step
-
Last edited by medalofhonour; 10-09-2013, 10:26 AM. -
Yes, I've seen it. The error message says "Please do NOT post this error to the GATK forum unless you have really tried to fix it yourself." so I had assumed that it was my mistake, something wrong with the command line. I reran VariantRecalibration with only the minimum of annotations, e.g. -an BaseQRankSum -an FS, and the error went away, so I assume it is when you are trying to use an annotation which only has minimal representation/information in the training variants in the input callset.
-
The immune system’s power comes from its genetic diversity, allowing myriad threats to be neutralized through first recognizing foreign antigens. That diversity is also what makes the immune system so difficult to study. Recent advances in sequencing technology and computational biology, however, are giving researchers new tools to understand immune responses and immune-related diseases in greater detail.
This convergence of genetics, immunology, and computation...09-01-2026, 05:41 AM
Comment