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  • JueFish
    Member
    • May 2010
    • 42

    #1

    unique kmers in genome equation?

    Hi all,

    Just trying to make sure I've got this right. Is this the correct equation for calculating the number of expected unique kmers in a library:

    Number of expected unique kmer = genome size + (number of reads)(mean length of read-kmer size - 1)(probably of error in read)

    I think I might have this written down in my notes wrong. Anyone let me know if I messed up or not?

    Thanks

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