unique kmers in genome equation?

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JueFish

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Join Date: May 2010

Posts: 42
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unique kmers in genome equation?

10-10-2013, 12:52 PM

Hi all,

Just trying to make sure I've got this right. Is this the correct equation for calculating the number of expected unique kmers in a library:

Number of expected unique kmer = genome size + (number of reads)(mean length of read-kmer size - 1)(probably of error in read)

I think I might have this written down in my notes wrong. Anyone let me know if I messed up or not?

Thanks
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