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  • bwa trouble making index

    Hi,

    While I was trying to make index for bwa, I encountered this error:


    d-128-61-165:bwa-0.7.5a xxx$ ./bwa index -p EMCTargetbwaidx -a bwtsw EntamoebaCTarget.fa
    [bwa_index] Pack FASTA... 0.00 sec
    [bwa_index] Construct BWT for the packed sequence...
    [BWTIncCreate] textLength=21312, availableWord=65536
    Segmentation fault

    First I thought it was some characters not allowed in the ">" line but it did not seem to be the case after I made very sure no special characters or space in the first line.

    Wonder if anyone would enlighten me what the problem is.

    Thanks

    Wing

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