Originally posted by vpi
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Parameters which limit the number of reported hits in tabular output are -max_target_seqs and -max_hsps_per_subject.
But you should be aware that by limiting the number of alignments reported for each query you may be throwing away important data. What the output you have shown above indicates is that this particular query (NODE_20) aligns to multiple locations on the genome of Desulfitobacterium hafniense DCB-2. That may be important!
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