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  • COG functions to categories

    Hi, I have a COG (Clusters of Orthologous Group) function lists and I want to know which COG categories these functions belong to?

    Does anyone know any websites where I can do search?

    Thanks.

  • #2
    Not sure exactly what you are asking. But this should answer a different post you have from a few days ago.

    This file appears to have the mappings of COG ID's to functions: ftp://ftp.ncbi.nih.gov/pub/wolf/COGs/COG0303/cogs.csv

    A list of the major COG categories is at this link: http://ecoliwiki.net/colipedia/index...ups_%28COGs%29
    Last edited by GenoMax; 11-02-2013, 04:06 PM.

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    • #3
      Thank you, the csv file is what I want.

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      • #4
        BTW, GenoMax, do you know is there any website that I can find detailed introduction for each COG function.

        For example, if I am interested in COG 001, I want know some details. What is the detailed function? What kind of enzyme?

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        • #5
          Originally posted by SDPA_Pet View Post
          BTW, GenoMax, do you know is there any website that I can find detailed introduction for each COG function.

          For example, if I am interested in COG 001, I want know some details. What is the detailed function? What kind of enzyme?
          Try this: ftp://ftp.ncbi.nih.gov/pub/wolf/COGs...3/listcogs.txt

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          • #6
            Hi All;
            Presently I am having the unigene sequences and I want to run COG but through command line I am not able to do this because I am confused how to prepared data base, so please help me to solve this problum.

            Thanks
            Joseph

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            • #7
              Preparation of COG library

              Hi All;
              Presently I am having the unigene sequences and I want to run COG but through command line I am not able to do this because I am confused how to prepared data base, so please help me to solve this problum.

              Thanks
              Joseph

              Comment


              • #8
                Originally posted by shivam View Post
                Hi All;
                Presently I am having the unigene sequences and I want to run COG but through command line I am not able to do this because I am confused how to prepared data base, so please help me to solve this problum.

                Thanks
                COG Software is here: ftp://ftp.ncbi.nih.gov/pub/wolf/COGs/COGsoft/
                References for the COG software and relevant publications: http://www.ncbi.nlm.nih.gov/COG/

                Comment

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