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  • roshanbernard
    replied
    thank you..

    Leave a comment:


  • sphil
    replied
    Originally posted by roshanbernard View Post
    Thanks a lot for the reply.,

    Can i do it even if its a set of contigs. i have around 70 contigs in each genome
    From Mauve docs:

    Sequence file input formats

    Genome sequence files can be given to Mauve in any of FastA, Multi-FastA, GenBank flat file, or raw formats. Mauve deduces the file format based on the file name extension. By default, a file with any unrecognized file name extension is assumed to be in (Multi-)FastA format.
    So I guess that should be no problem!

    Leave a comment:


  • roshanbernard
    replied
    Thanks a lot for the reply.,

    Can i do it even if its a set of contigs. i have around 70 contigs in each genome

    Leave a comment:


  • sphil
    replied
    there is : Mauve
    or this one: MGA

    i always used mauve when i had to do a full genome alignment

    Leave a comment:


  • roshanbernard
    started a topic Whole genome alighment

    Whole genome alighment

    Hi,

    Can someone suggest me the tools which can be used for whole genome alignments.

    I am having the data in contigs and not as one complete circular genome.

    and i need to compare two bacteria belong to same species.

    can some one help me out

    regards

    Rosh

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