Hi,
My fastq file is in Casava 1.7 header and I want to convert it to Casava 1.6 or 1.8 (see below), as required by Agalma https://bitbucket.org/caseywdunn/agalma
My present header (Casava 1.7):
@HISEQ2_0910:3:1101:1388:1998#TTAGGC/1 run=120427_SN1076_0910_AC0FNUACXX
CTGGAGGCCAACGGCCGCGGCTACTGGGACACCTCGGACGAGAACCTGGA
+HISEQ2_0910:3:1101:1388:1998#TTAGGC/1
babeeeeegggggiiiiiiiiihiiiiihifhiggggeeccccccccccc
Casava 1.6 FASTQ header:
@HWI-ST625:3:1:1330:2071#0/1
@<instrument>:<lane>:<tile>:<x-pos>:<y-pos>#<index number>/<read>
Casava 1.8 FASTQ header:
@HWI-ST625:73:C0JUVACXX:7:1101:1403:1923 1:N:0:TGACCA
@<instrument>:<run number>:<flowcell ID>:<lane>:<tile>:<x-pos>:<y-pos> <read>:<is filtered>:<control number>:<indexsequence>
Is there any help? Thanks a lot!
Victoria
My fastq file is in Casava 1.7 header and I want to convert it to Casava 1.6 or 1.8 (see below), as required by Agalma https://bitbucket.org/caseywdunn/agalma
My present header (Casava 1.7):
@HISEQ2_0910:3:1101:1388:1998#TTAGGC/1 run=120427_SN1076_0910_AC0FNUACXX
CTGGAGGCCAACGGCCGCGGCTACTGGGACACCTCGGACGAGAACCTGGA
+HISEQ2_0910:3:1101:1388:1998#TTAGGC/1
babeeeeegggggiiiiiiiiihiiiiihifhiggggeeccccccccccc
Casava 1.6 FASTQ header:
@HWI-ST625:3:1:1330:2071#0/1
@<instrument>:<lane>:<tile>:<x-pos>:<y-pos>#<index number>/<read>
Casava 1.8 FASTQ header:
@HWI-ST625:73:C0JUVACXX:7:1101:1403:1923 1:N:0:TGACCA
@<instrument>:<run number>:<flowcell ID>:<lane>:<tile>:<x-pos>:<y-pos> <read>:<is filtered>:<control number>:<indexsequence>
Is there any help? Thanks a lot!
Victoria