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  • #31
    Usually, with small RNAs being not bigger than 24 nt, you would filter for reads between maybe 15 - 28 nt length. Those are the complete transcripts, so no need for any assembly.

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    • #32
      Could you run a program like Cufflinks specifying a mean transcript length of about 18 nts, and then get a gtf file of the different transcripts?

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