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  • Peggy Liang
    Junior Member
    • Oct 2013
    • 6
    #1

    1000 Genome data download for help?

    HI,every one
    Recently, I downloaded 1000 Genomes data to make CNV discovery analysis,but there are many options ,I do not know what to select ?Which is necessary for CNV discovery?
    NA12878.chrom11.ILLUMINA.bwa.CEU.low_coverage.20121211.bam 673 MB
    NA12878.chrom11.ILLUMINA.bwa.CEU.low_coverage.20121211.bam.bai 385 kB
    NA12878.chrom11.ILLUMINA.bwa.CEU.low_coverage.20121211.bam.bas 599 B
    NA12878.chrom20.ILLUMINA.bwa.CEU.low_coverage.20121211.bam 297 MB
    NA12878.chrom20.ILLUMINA.bwa.CEU.low_coverage.20121211.bam.bai 176 kB
    NA12878.chrom20.ILLUMINA.bwa.CEU.low_coverage.20121211.bam.bas 599 B
    NA12878.mapped.ILLUMINA.bwa.CEU.low_coverage.20120522.bam.csra 4.2 GB
    NA12878.mapped.ILLUMINA.bwa.CEU.low_coverage.20121211.bam 15.1 GB
    NA12878.mapped.ILLUMINA.bwa.CEU.low_coverage.20121211.bam.bai 8.4 MB
    NA12878.mapped.ILLUMINA.bwa.CEU.low_coverage.20121211.bam.bas 614 B
    NA12878.mapped.ILLUMINA.bwa.CEU.low_coverage.20121211.bam.cram 4.2 GB
    NA12878.mapped.ILLUMINA.bwa.CEU.low_coverage.20121211.bam.cram.crai 308 kB
    NA12878.unmapped.ILLUMINA.bwa.CEU.low_coverage.20121211.bam 344 MB
    NA12878.unmapped.ILLUMINA.bwa.CEU.low_coverage.20121211.bam.bai 896 B
    NA12878.unmapped.ILLUMINA.bwa.CEU.low_coverage.20121211.bam.bas
    546 B
    And When I look up to high_coverage bam file,The file is too large,almost 250G,Can I choose one chromosome to download?
    NA12878.mapped.ILLUMINA.bwa.CEU.high_coverage_pcr_free.20130906.bam 234 GB
    NA12878.mapped.ILLUMINA.bwa.CEU.high_coverage_pcr_free.20130906.bam.bai 9.8 MB
    NA12878.mapped.ILLUMINA.bwa.CEU.high_coverage_pcr_free.20130906.bam.cram 112 GB
    NA12878.mapped.ILLUMINA.bwa.CEU.high_coverage_pcr_free.20130906.bam.cram.crai 1.3 MB
    Help someone cauld help me.Thanks in advance!
    Tags: None
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