seq pathway analysis

[wmseq]

Hi every one,
I am new to the rnaseq pathway analysis. I have finished rnaseq analysis of my experiments, I'd like to do the pathway analysis of de. genes using gage, but I don't know how to start this analysis.

Can I directedly used the differently expressed genes from rnaseq analysis?

Thanks!

Richard

[GenoMax]

http://seqanswers.com/forums/showthread.php?t=34679

See tutorials referred to in post #1.

[wmseq]

Thanks a lot, GenoMax!
I have read the tutorials, but I have no idea how to start this analysis, because I don't know which results of edger analysis should be feed into GAGE/Pahview for pathway analysis or visualization.

[wmseq]

Hi, GenoMax,
I found the paragraph on jointing workflows with edge R. Thans!