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  • Finding the coordinate of combined bed file

    Hi All,
    Does any body know if there any bed tool or any other tool to solve problem like this
    I have a combined bed file . which I created from 9 bedgraph file which I made them bed file ( which has 5 row bed )
    chr1 10000 10001 pos 2
    chr1 10000 10001 pos 5
    chr1 10000018 10000054 pos 1
    chr1 100000054 100000090 pos 1
    chr1 100000109 100000145 pos 1
    chr1 100000196 100000232 pos 1
    chr1 100000340 100000376 pos 1
    chr1 100000414 100000450 pos 1

    what I want to do is
    there is like bed file like this
    chr1 100 280 pos
    chr2 180 250 pos
    I want to have the score for 100-180+180-250
    I used the merge bed scores sum options which I guess is doing like this
    It is giving me score from 100 to 280


    Thanks in advance ,
    Anusha.Ch

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