Blast Results GO Mapping

milo0615

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Join Date: Dec 2012

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#1

Blast Results GO Mapping

11-19-2013, 03:19 PM

Hello,

I have completed a BLAST run of a set of COS (conserved orthologs) using tblastn against a database generated by Abyss (Assembly By Short Sequences). However, I now want to mapp the blast results with its respective GO. I tried to use BLAST2GO by importing the blast result into the GUI, but the final mapping GO is 0. I am guessing it is not mapping to the GO because I used tblastn for the blast search?

Is there any other way to map the GO's to the blast results or the COS?

Any help would be really appreciated.

Thank you
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Gopo

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Join Date: Nov 2013

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11-20-2013, 07:43 AM

You might want to give GOanna a try

http://www.agbase.msstate.edu/cgi-bin/tools/GOanna.cgi
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