19 33769843 * */+TCTC 29 29 42 3 * +TCTC 2 1 0 0 0
19 33776199 * */-TTT 90 90 49 8 * -TTT 6 2 0 0 0
19 33778072 T TT 63 0 42 12 ,,,..,,.,,.. >?<8>=?=,5@@
19 33841537 * */-AAA 2 2 49 12 * -AAA 11 1 0 0 0
19 33845663 * */-TTTTTTTTTTTTT 151 151 46 13 * -TTTTTTTTTTTTT 10 3 0 0 0
It then pass samtools varfilter, and was reported as SNP and crashed my pipeline. Anyone has idea about this?
19 33776199 * */-TTT 90 90 49 8 * -TTT 6 2 0 0 0
19 33778072 T TT 63 0 42 12 ,,,..,,.,,.. >?<8>=?=,5@@
19 33841537 * */-AAA 2 2 49 12 * -AAA 11 1 0 0 0
19 33845663 * */-TTTTTTTTTTTTT 151 151 46 13 * -TTTTTTTTTTTTT 10 3 0 0 0
It then pass samtools varfilter, and was reported as SNP and crashed my pipeline. Anyone has idea about this?
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