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  • Determine CpG Island coverage

    I'm working with some Reduced Representation Bisulfite Sequenced datasets. After aligning the reads to the reference genome (Sus Scrofa), I want to determine the number (percent) of CpG islands I have covered in my dataset (classified as minimum 200bp, >50% GC content), but I'm having trouble figuring out the best way to do this. Does anyone have any experience with this type of analysis? Any help would be appreciated. Thank you very much!

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  • seqadmin
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    03-22-2024, 06:39 AM
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    Matthew DeSaix, a recent doctoral graduate from Kristen Ruegg’s lab at The University of Colorado, shared that most of his research...
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