SeqGenomeBrowser : A mini genome browser for NGS data

[knightfeng]

Hi, all
If you need to visualize your next-generation seqeuencing data, you can try a new mini local genome browser, SeqGenomeBrowser, which is :

1. very easy to use
2. ligtht and fast
3. no preliminary installation or configuration needed
4. handle large data and use little memory (less than 50M)
5. support standard USCS file format such as bed, wig and refFlat
6. cross platform

SeqGenomeBrowser is available at http://sourceforge.net/projects/seqgenomebrowse/

[sklages]

Hi,

after downloading & extracting on a 64bit linux platform,

$ ./bin/SeqGenomeBrowser
QMetaObject::connectSlotsByName: No matching signal for on_GotoChrRange_clicked()
./bin/SeqGenomeBrowser: symbol lookup error: ./bin/SeqGenomeBrowser: undefined symbol: FT_Library_SetLcdFilter

cheers,
Sven

[steven]

Hi, all
If you need to visualize your next-generation seqeuencing data, you can try a new mini local genome browser, SeqGenomeBrowser, which is :

1. very easy to use
2. ligtht and fast
3. no preliminary installation or configuration needed
4. handle large data and use little memory (less than 50M)
5. support standard USCS file format such as bed, wig and refFlat
6. cross platform

SeqGenomeBrowser is available at http://sourceforge.net/projects/seqgenomebrowse/

Nice app! Light and fast indeed, convenient for a quick overview. A bit restrictive on the input format though (only 4 or 6 columns bed files are accepted).

[knightfeng]

Hi,

after downloading & extracting on a 64bit linux platform,

$ ./bin/SeqGenomeBrowser
QMetaObject::connectSlotsByName: No matching signal for on_GotoChrRange_clicked()
./bin/SeqGenomeBrowser: symbol lookup error: ./bin/SeqGenomeBrowser: undefined symbol: FT_Library_SetLcdFilter

cheers,
Sven

Could the GUI be launched correctly after the warning message? If not, it may be a bug on linux 64 system. SeqGenomeBrowser was expected to has the same behavior on Windows, linux and Mac. Could you tell what linux systerm you used?

Thanks.

Zhixing

[knightfeng]

Nice app! Light and fast indeed, convenient for a quick overview. A bit restrictive on the input format though (only 4 or 6 columns bed files are accepted).

Thank you for using SeqGenomeBrowser and your nice suggestion. More file formats including the full version bed format will be supported in the next version.

Best.

Zhixing

[lh3]

Before you go further, it may be worth thinking what features make your viewer unique to other existing viewers which are largely covered in this thread:

http://seqanswers.com/forums/showthread.php?t=3904

[krobison]

Also, please create an entry for your tool in the wiki

http://seqanswers.com/wiki/Software

[Xi Wang]

Nice, you come here to market your software.

Before you go further, it may be worth thinking what features make your viewer unique to other existing viewers which are largely covered in this thread:

http://seqanswers.com/forums/showthread.php?t=3904

Thanks, Heng, a pretty sharp suggestion.