How to construct a phylogenetic tree from a binary matrix

[diego diaz]

Hello

I need to generate a phylogenetic tree from a binary matrix.

First, i mapped the reads to the reference genome, then, i made the SNP calling with samtools, finally, i wrote a small script in perl to construct the matrix.

I have seen that there is a R package called "ape" that i can use for this purpose. I downloaded and installed it, but i don't know how to use it, i don't know much about R.

Anyone know how to get the tree from the binary matrix with ape?

thanks in advance.