1000G fasta file for 30X high cover cram files

[colinhercus]

Hi,

I've downloaded some cram files for 30X GRCH38 alignments that I want to remap but I can't find any mention of which grch38.fa was used when building the cram files. This is causing problems when trying to convert cram ->bam->fastq

Does anyone know which reference fasta was used and where to download it.

Thanks, Colin

[SylvainL]

Hi,
it looks like you have to follow this link...

https://console.cloud.google.com/storage/browser/genomics-public-data/resources/broad/hg38/v0;tab=objects?pli=1&prefix=&forceOnObjectsSortingFiltering=false

[colinhercus]

Thanks. I'll try that with the cram files.