Header Leaderboard Ad

Collapse

1000G fasta file for 30X high cover cram files

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • 1000G fasta file for 30X high cover cram files

    Hi,

    I've downloaded some cram files for 30X GRCH38 alignments that I want to remap but I can't find any mention of which grch38.fa was used when building the cram files. This is causing problems when trying to convert cram ->bam->fastq

    Does anyone know which reference fasta was used and where to download it.

    Thanks, Colin

  • #2
    Hi,
    it looks like you have to follow this link...
    https://console.cloud.google.com/sto...iltering=false
    Last edited by SylvainL; 06-29-2022, 12:06 AM.

    Comment


    • #3
      Thanks. I'll try that with the cram files.

      Comment

      Latest Articles

      Collapse

      • seqadmin
        Improved Targeted Sequencing: A Comprehensive Guide to Amplicon Sequencing
        by seqadmin



        Amplicon sequencing is a targeted approach that allows researchers to investigate specific regions of the genome. This technique is routinely used in applications such as variant identification, clinical research, and infectious disease surveillance. The amplicon sequencing process begins by designing primers that flank the regions of interest. The DNA sequences are then amplified through PCR (typically multiplex PCR) to produce amplicons complementary to the targets. RNA targets...
        03-21-2023, 01:49 PM
      • seqadmin
        Targeted Sequencing: Choosing Between Hybridization Capture and Amplicon Sequencing
        by seqadmin




        Targeted sequencing is an effective way to sequence and analyze specific genomic regions of interest. This method enables researchers to focus their efforts on their desired targets, as opposed to other methods like whole genome sequencing that involve the sequencing of total DNA. Utilizing targeted sequencing is an attractive option for many researchers because it is often faster, more cost-effective, and only generates applicable data. While there are many approaches...
        03-10-2023, 05:31 AM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by seqadmin, Today, 02:45 PM
      0 responses
      8 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 03-22-2023, 12:26 PM
      0 responses
      12 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 03-17-2023, 12:32 PM
      0 responses
      15 views
      0 likes
      Last Post seqadmin  
      Started by seqadmin, 03-15-2023, 12:42 PM
      0 responses
      21 views
      0 likes
      Last Post seqadmin  
      Working...
      X