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1000G fasta file for 30X high cover cram files

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  • 1000G fasta file for 30X high cover cram files

    Hi,

    I've downloaded some cram files for 30X GRCH38 alignments that I want to remap but I can't find any mention of which grch38.fa was used when building the cram files. This is causing problems when trying to convert cram ->bam->fastq

    Does anyone know which reference fasta was used and where to download it.

    Thanks, Colin

  • #2
    Hi,
    it looks like you have to follow this link...
    https://console.cloud.google.com/sto...iltering=false
    Last edited by SylvainL; Yesterday, 12:06 AM.

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    • #3
      Thanks. I'll try that with the cram files.

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