Hi - I'm new to bioinformatics and trying to use the command line version of blastn. The web version of blastn has an option to show coding sequences near in or near any hits. I have not been able to find this option in any of the command line out-formats. Does anybody know if this is possible? Thank you!
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NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification,...10-30-2026, 06:46 AM
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