Illumina mate-pair analysis
We are beginners in this forum and would appreciate any help from any corner.
We have generated mate-pair data using Solexa and want to analyze the data to fish for structural changes in genome. It seems that this information is there in the anomaly.txt file that Solexa pipeline spits out but how do we parse this file? Any other way we could utilize information in this file to analyze and visulize structural changes? We are also keen on using Circos but haven't used it yet.
Any insight would be very much appreciated.
Shu
We have generated mate-pair data using Solexa and want to analyze the data to fish for structural changes in genome. It seems that this information is there in the anomaly.txt file that Solexa pipeline spits out but how do we parse this file? Any other way we could utilize information in this file to analyze and visulize structural changes? We are also keen on using Circos but haven't used it yet.
Any insight would be very much appreciated.
Shu
